There is a newer version of BEDToolsThe BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM.
Accessing BEDTools 2.29.2-GCC-9.3.0
To load the module for BEDTools 2.29.2-GCC-9.3.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load BEDTools/2.29.2-GCC-9.3.0
BEAR Apps Version
For more information visit the BEDTools website.
This version of BEDTools has a direct dependency on: BamTools/2.5.1-GCC-9.3.0 bzip2/1.0.8-GCCcore-9.3.0 GCC/9.3.0 XZ/5.2.5-GCCcore-9.3.0 zlib/1.2.11-GCCcore-9.3.0
This version of BEDTools is a direct dependent of: Roary/3.13.0-foss-2020a SICER2/1.0.3-foss-2020a-Python-3.8.2
These versions of BEDTools are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
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Last modified on 10th November 2020