BEAR Applications: Biopython 1.79-foss-2021b (for BlueBEAR, BEARCloud VMs, and CaStLeS VMs)

Biopython 1.79-foss-2021b

Biopython is a set of freely available tools for biological computation written in Python by an international team of developers. It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics.

Accessing Biopython 1.79-foss-2021b

To load the module for Biopython 1.79-foss-2021b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load Biopython/1.79-foss-2021b

BEAR Apps Version

2020b

More Information

For more information visit the Biopython website.

Dependencies

This version of Biopython has a direct dependency on: foss/2021b Python/3.9.6-GCCcore-11.2.0 SciPy-bundle/2021.10-foss-2021b

Required By

This version of Biopython is a direct dependent of: bcbio-gff/0.6.9-foss-2021b Bisbee/20210108-foss-2021b-R-4.2.0 CIRI-long/1.1.0-foss-2021b CMSeq/1.0.4-foss-2021b ecc_finder/1.0.0_20221007_67d06f3-foss-2021b MetaPhlAn/3.0.14-foss-2021b NanoFilt/2.8.0-foss-2021b panaroo/1.3.2-foss-2021b PhyloPhlAn/3.0.2-foss-2021b TOBIAS/0.13.3-foss-2021b

Other Versions

These versions of Biopython are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version	BEAR Apps Version
1.79-foss-2021a	2021a
1.78-foss-2020b	2020b
1.78-foss-2020a-Python-3.8.2	2020a
1.75-foss-2019b-Python-3.7.4	2019b
1.75-foss-2019b-Python-2.7.16	2019b
1.73-fosscuda-2019a	2019a
1.73-foss-2019a	2019a
1.73-foss-2018b-Python-2.7.15	2018b
1.72-foss-2018b-Python-3.6.6	2018b
1.72-foss-2018b-Python-2.7.15	2018b

Last modified on 14th July 2022