BEAR Applications

Bismark 0.22.3-foss-2019b

A tool to map bisulfite converted sequence reads and determine cytosine methylation states

Accessing Bismark 0.22.3-foss-2019b

To load the module for Bismark 0.22.3-foss-2019b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load Bismark/0.22.3-foss-2019b

BEAR Apps Version

2020b

More Information

For more information visit the Bismark website.

Dependencies

This version of Bismark has a direct dependency on: Bowtie2/2.3.5.1-GCC-8.3.0 foss/2019b Perl/5.30.0-GCCcore-8.3.0 SAMtools/1.10-GCC-8.3.0

Required By

This version of Bismark is a direct dependent of: FastQ_Screen/0.14.1-foss-2019b-Perl-5.30.0

Last modified on 17th June 2020