Bowtie2 2.3.4.2-foss-2018b
There is a newer version of Bowtie2
Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences.Accessing Bowtie2 2.3.4.2-foss-2018b
To load the module for Bowtie2 2.3.4.2-foss-2018b please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):
module load Bowtie2/2.3.4.2-foss-2018b
BEAR Apps Version
Bowtie2 and Python
The bowtie2-build
and bowtie2-inspect
scripts require Python. Please load either Python 3 or Python 2, as necessary, if you wish to use these scripts.
More Information
For more information visit the Bowtie2 website.
Dependencies
This version of Bowtie2 has a direct dependency on: foss/2018b tbb/2018_U5-GCCcore-7.3.0 zlib/1.2.11-GCCcore-7.3.0
Required By
This version of Bowtie2 is a direct dependent of: ariba/2.13.5-foss-2018b-Python-3.6.6 srst2/0.2.0-foss-2018b-Python-2.7.15 TraCeR/0.6.0-foss-2018b-Python-3.6.6 TRAPeS/e65bb7b-foss-2018b-Python-2.7.15 Trinity/2.8.4-foss-2018b
Other Versions
These versions of Bowtie2 are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
Version | BEAR Apps Version |
---|---|
2.4.4-GCC-11.2.0 | 2021b |
2.4.4-GCC-10.3.0 | 2021a |
2.3.5.1-GCC-8.3.0 | 2019b |
Last modified on 3rd June 2019