Cellpose 0.6.5-foss-2021a-CUDA-11.3.1

a generalist algorithm for cellular segmentation

Accessing Cellpose 0.6.5-foss-2021a-CUDA-11.3.1

To load the module for Cellpose 0.6.5-foss-2021a-CUDA-11.3.1 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load Cellpose/0.6.5-foss-2021a-CUDA-11.3.1

There is a CPU version of this module: Cellpose 0.6.5-foss-2021a

BEAR Apps Version

2020b

Extensions

  • Cellpose 0.6.5
  • natsort 7.1.1
  • pyqtgraph 0.12.2
  • tifffile 2021.8.8

More Information

For more information visit the Cellpose website.

Dependencies

This version of Cellpose has a direct dependency on: CUDA/11.3.1 foss/2021a numba/0.53.1-foss-2021a OpenCV/4.5.3-foss-2021a-CUDA-11.3.1-contrib PyQt5/5.15.4-GCCcore-10.3.0 Python/3.9.5-GCCcore-10.3.0 PyTorch/1.9.1-foss-2021a-CUDA-11.3.1-imkl tqdm/4.61.2-GCCcore-10.3.0

Other Versions

These versions of Cellpose are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 11th October 2021