ChAMP 2.18.3-foss-2020a-R-4.0.0
The package includes quality control metrics, a selection of normalization methods and novel methods to identify differentially methylated regions and to highlight copy number alterations.Accessing ChAMP 2.18.3-foss-2020a-R-4.0.0
To load the module for ChAMP 2.18.3-foss-2020a-R-4.0.0 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):
module load ChAMP/2.18.3-foss-2020a-R-4.0.0
BEAR Apps Version
Extensions
- bsseq 1.24.4
- ChAMP 2.18.3
- ChAMPdata 2.20.0
- DMRcate 2.2.3
- DSS 2.36.0
- Illumina450ProbeVariants.db 1.24.0
- IRanges 2.22.2
- isva 1.9
- JADE-2.0-3
- kpmt 0.1.0
- missMethyl 1.22.0
- prettydoc 0.4.1
- ROC 1.64.0
- RPMM 1.25
- ruv 0.9.7.1
- wateRmelon 1.32.0
More Information
For more information visit the ChAMP website.
Dependencies
This version of ChAMP has a direct dependency on: foss/2020a R/4.0.0-foss-2020a R-bundle-Bioconductor/3.11-foss-2020a-R-4.0.0
Required By
This version of ChAMP is a direct dependent of: BEAR-R-bio/2020a-foss-2020a-R-4.0.0
Last modified on 28th October 2022