DNMFilter 0.1.1-foss-2018b-R-3.5.1-Java-1.8

DNMFilter is a machine learning based tool designed to filter out false positive de novo mutations (DNMs) obtained by any computational or manual approaches from next generation sequencing data. It can be used as either a stand-alone tool to detect DNM or coupled with other commonly used DNM detection tool (GATK UnifiledGenotyper, polymutt, DenovoGear et al.) to improve specificity.

Accessing DNMFilter 0.1.1-foss-2018b-R-3.5.1-Java-1.8

To load the module for DNMFilter 0.1.1-foss-2018b-R-3.5.1-Java-1.8 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load DNMFilter/0.1.1-foss-2018b-R-3.5.1-Java-1.8

BEAR Apps Version

2020b

Extensions

  • Runiversal 1.0.2

More Information

For more information visit the DNMFilter website.

Dependencies

This version of DNMFilter has a direct dependency on: foss/2018b Java/1.8 R/3.5.1-foss-2018b

Last modified on 17th June 2019