DeepMod 0.1.1-foss-2019a-Python-3.7.2

DeepMod is a computational tool which takes long-read signals as input and outputs modification summary for each genomic position in a reference genome together with modification prediction for each base in a long read.

Accessing DeepMod 0.1.1-foss-2019a-Python-3.7.2

To load the module for DeepMod 0.1.1-foss-2019a-Python-3.7.2 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load DeepMod/0.1.1-foss-2019a-Python-3.7.2

BEAR Apps Version

2020b

More Information

For more information visit the DeepMod website.

Dependencies

This version of DeepMod has a direct dependency on: foss/2019a minimap2/2.13-foss-2019a Python/3.7.2-GCCcore-8.2.0 R/3.6.0-foss-2019a SAMtools/1.9-GCC-8.2.0-2.31.1 scikit-learn/0.20.3-foss-2019a TensorFlow/1.13.1-foss-2019a-Python-3.7.2

Last modified on 13th March 2020