There is a newer version of DeepbinnerDeepbinner is a tool for demultiplexing barcoded Oxford Nanopore sequencing reads. It does this with a deep convolutional neural network classifier, using many of the architectural advances that have proven successful in image classification.
Accessing Deepbinner 0.2.0-foss-2018b-Python-3.6.6
To load the module for Deepbinner 0.2.0-foss-2018b-Python-3.6.6 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load Deepbinner/0.2.0-foss-2018b-Python-3.6.6
BEAR Apps Version
- Deepbinner 0.2.0
For more information visit the Deepbinner website.
This version of Deepbinner has a direct dependency on: foss/2018b h5py/2.8.0-foss-2018b-Python-3.6.6 HDF5/1.10.2-foss-2018b Keras/2.2.4-foss-2018b-Python-3.6.6 Python/3.6.6-foss-2018b wheel/0.31.1-foss-2018b-Python-3.6.6
These versions of Deepbinner are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
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Last modified on 3rd June 2019