There is a newer version of EIGENSOFTThe EIGENSOFT package combines functionality from our population genetics methods (Patterson et al. 2006) and our EIGENSTRAT stratification correction method (Price et al. 2006). The EIGENSTRAT method uses principal components analysis to explicitly model ancestry differences between cases and controls along continuous axes of variation; the resulting correction is specific to a candidate marker's variation in frequency across ancestral populations, minimizing spurious associations while maximizing power to detect true associations. The EIGENSOFT package has a built-in plotting script and supports multiple file formats and quantitative phenotypes.
Accessing EIGENSOFT 6.1.4-foss-2018b
To load the module for EIGENSOFT 6.1.4-foss-2018b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load EIGENSOFT/6.1.4-foss-2018b
BEAR Apps Version
For more information visit the EIGENSOFT website.
This version of EIGENSOFT has a direct dependency on: foss/2018b Ghostscript/9.23-GCCcore-7.3.0 GSL/2.5-GCC-7.3.0-2.30
These versions of EIGENSOFT are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
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Last modified on 3rd June 2019