OncoSNP-Seq 2.01

OncoSNP-SEQ is an analytical tool for characterising copy number alterations and loss-of-heterozygosity (LOH) events in cancer samples from whole genome sequencing data.

Accessing OncoSNP-Seq 2.01

To load the module for OncoSNP-Seq 2.01 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load OncoSNP-Seq/2.01

BEAR Apps Version


Using OncoSNP-Seq

To run this application, issue the following command:

run_oncoseq.sh ${MCRROOT} [options]

More Information

For more information visit the OncoSNP-Seq website.


This version of OncoSNP-Seq has a direct dependency on: MCR/R2013b

Last modified on 20th May 2019