PhyloPhlAn 3.0.2-foss-2021b

PhyloPhlAn is an integrated pipeline for large-scale phylogenetic profiling of genomes and metagenomes. PhyloPhlAn is an accurate, rapid, and easy-to-use method for large-scale microbial genome characterization and phylogenetic analysis at multiple levels of resolution.

Accessing PhyloPhlAn 3.0.2-foss-2021b

To load the module for PhyloPhlAn 3.0.2-foss-2021b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load PhyloPhlAn/3.0.2-foss-2021b

BEAR Apps Version

2020b

More Information

For more information visit the PhyloPhlAn website.

Dependencies

This version of PhyloPhlAn has a direct dependency on: Biopython/1.79-foss-2021b BLAST+/2.12.0-gompi-2021b DendroPy/4.5.2-GCCcore-11.2.0 DIAMOND/2.0.13-GCC-11.2.0 FastTree/2.1.11-GCCcore-11.2.0 foss/2021b IQ-TREE/2.2.1-gompi-2021b MAFFT/7.490-gompi-2021b-with-extensions matplotlib/3.4.3-foss-2021b MUSCLE/5.1-GCCcore-11.2.0 Python/3.9.6-GCCcore-11.2.0 SciPy-bundle/2021.10-foss-2021b Seaborn/0.11.2-foss-2021b SEPP/4.5.1-foss-2021b trimAl/1.4.1-GCCcore-11.2.0 USEARCH/11.0.667-i86linux32

Required By

This version of PhyloPhlAn is a direct dependent of: MetaPhlAn/3.0.14-foss-2021b

Last modified on 14th July 2022