PyEnsembl 2.0.1-foss-2021b

Python interface to access reference genome features (such as genes, transcripts and exons) from Ensembl.

Accessing PyEnsembl 2.0.1-foss-2021b

To load the module for PyEnsembl 2.0.1-foss-2021b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load PyEnsembl/2.0.1-foss-2021b

BEAR Apps Version

2020b

Extensions

  • datacache 1.1.5
  • gtfparse 1.2.1
  • memoized-property-1.0.3
  • progressbar33 2.4
  • PyEnsembl 2.0.1
  • serializable 0.2.1
  • tinytimer 20150320
  • typechecks 0.1.0

More Information

For more information visit the PyEnsembl website.

Dependencies

This version of PyEnsembl has a direct dependency on: foss/2021b Python/3.9.6-GCCcore-11.2.0 SciPy-bundle/2021.10-foss-2021b

Required By

This version of PyEnsembl is a direct dependent of: Bisbee/20210108-foss-2021b-R-4.2.0

Last modified on 7th October 2022