Python 3.10.4-GCCcore-11.3.0

There is a newer version of Python

Python is a programming language that lets you work more quickly and integrate your systems more effectively.

Accessing Python 3.10.4-GCCcore-11.3.0

To load the module for Python 3.10.4-GCCcore-11.3.0 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load Python/3.10.4-GCCcore-11.3.0

BEAR Apps Version

2020b

Extensions

  • alabaster 0.7.12
  • appdirs 1.4.4
  • asn1crypto 1.5.1
  • atomicwrites 1.4.0
  • attrs 21.4.0
  • Babel 2.10.1
  • backports.entry_points_selectable 1.1.1
  • backports.functools_lru_cache 1.6.4
  • bcrypt 3.2.2
  • bitstring 3.1.9
  • blist 1.3.6
  • CacheControl 0.12.11
  • cachy 0.3.0
  • certifi 2021.10.8
  • cffi 1.15.0
  • chardet 4.0.0
  • charset-normalizer-2.0.12
  • cleo 0.8.1
  • click 8.1.3
  • clikit 0.6.2
  • colorama 0.4.4
  • crashtest 0.3.1
  • cryptography 37.0.1
  • Cython 0.29.28
  • decorator 5.1.1
  • distlib 0.3.4
  • docopt 0.6.2
  • docutils 0.17.1
  • ecdsa 0.17.0
  • editables 0.3
  • filelock 3.6.0
  • flit 3.7.1
  • flit-core-3.7.1
  • fsspec 2022.3.0
  • future 0.18.2
  • glob2 0.7
  • html5lib 1.1
  • idna 3.3
  • imagesize 1.3.0
  • importlib_metadata 4.11.3
  • importlib_resources 5.7.1
  • iniconfig 1.1.1
  • intervaltree 3.1.0
  • intreehooks 1.0
  • ipaddress 1.0.23
  • jeepney 0.8.0
  • Jinja2 3.1.2
  • joblib 1.1.0
  • jsonschema 4.4.0
  • keyring 23.5.0
  • keyrings.alt 4.1.0
  • liac-arff-2.5.0
  • lockfile 0.12.2
  • MarkupSafe 2.1.1
  • mock 4.0.3
  • more-itertools-8.12.0
  • msgpack 1.0.3
  • netaddr 0.8.0
  • netifaces 0.11.0
  • packaging 20.9
  • paramiko 2.10.4
  • pastel 0.2.1
  • pathlib2 2.3.7.post1
  • pathspec 0.9.0
  • pbr 5.8.1
  • pexpect 4.8.0
  • pip 22.0.4
  • pkginfo 1.8.2
  • platformdirs 2.4.1
  • pluggy 1.0.0
  • poetry 1.1.13
  • poetry-core-1.0.8
  • psutil 5.9.0
  • ptyprocess 0.7.0
  • py 1.11.0
  • py_expression_eval 0.3.14
  • pyasn1 0.4.8
  • pycparser 2.21
  • pycrypto 2.6.1
  • Pygments 2.12.0
  • pylev 1.4.0
  • PyNaCl 1.5.0
  • pyparsing 3.0.8
  • pyrsistent 0.18.1
  • pytest 7.1.2
  • python-dateutil-2.8.2
  • pytoml 0.1.21
  • pytz 2022.1
  • regex 2022.4.24
  • requests 2.27.1
  • requests-toolbelt-0.9.1
  • scandir 1.10.0
  • SecretStorage 3.3.2
  • semantic_version 2.9.0
  • setuptools 62.1.0
  • setuptools-rust-1.3.0
  • setuptools_scm 6.4.2
  • shellingham 1.4.0
  • simplegeneric 0.8.1
  • simplejson 3.17.6
  • six 1.16.0
  • snowballstemmer 2.2.0
  • sortedcontainers 2.4.0
  • Sphinx 4.5.0
  • sphinx-bootstrap-theme-0.8.1
  • sphinxcontrib-applehelp-1.0.2
  • sphinxcontrib-devhelp-1.0.2
  • sphinxcontrib-htmlhelp-2.0.0
  • sphinxcontrib-jsmath-1.0.1
  • sphinxcontrib-qthelp-1.0.3
  • sphinxcontrib-serializinghtml-1.1.5
  • sphinxcontrib-websupport-1.2.4
  • tabulate 0.8.9
  • threadpoolctl 3.1.0
  • toml 0.10.2
  • tomli 2.0.1
  • tomli_w 1.0.0
  • tomlkit 0.10.2
  • typing_extensions 4.2.0
  • ujson 5.2.0
  • urllib3 1.26.9
  • virtualenv 20.14.1
  • wcwidth 0.2.5
  • webencodings 0.5.1
  • wheel 0.37.1
  • xlrd 2.0.1
  • zipfile36 0.1.3
  • zipp 3.8.0

More Information

For more information visit the Python website.

Dependencies

This version of Python has a direct dependency on: binutils/2.38-GCCcore-11.3.0 bzip2/1.0.8-GCCcore-11.3.0 GCCcore/11.3.0 GMP/6.2.1-GCCcore-11.3.0 libffi/3.4.2-GCCcore-11.3.0 libreadline/8.1.2-GCCcore-11.3.0 ncurses/6.3-GCCcore-11.3.0 OpenSSL/1.1 SQLite/3.38.3-GCCcore-11.3.0 XZ/5.2.5-GCCcore-11.3.0 zlib/1.2.12-GCCcore-11.3.0

Required By

This version of Python is a direct dependent of: adjustText/0.7.3-foss-2022a aiohttp/3.8.3-GCCcore-11.3.0 AlphaFold/2.3.1-foss-2022a-CUDA-11.7.0 AlphaFold/2.3.1-foss-2022a Arrow/8.0.0-foss-2022a Arrow/8.0.0-foss-2022a-CUDA-11.7.0 Barracuda_Virtual_Reactor/22.1.1-GCCcore-11.3.0 BeautifulSoup/4.10.0-GCCcore-11.3.0 BiobankRead-Bash/3.1.1-20190507-foss-2022a Biopython/1.79-foss-2022a BioServices/1.11.2-foss-2022a bokeh/2.4.3-foss-2022a Boost.Python/1.79.0-GCC-11.3.0 Cantera/2.6.0-foss-2022a cell2location/0.1.3-foss-2022a-CUDA-11.7.0 cell2location/0.1.3-foss-2022a Cellpose/2.2-foss-2022a Cellpose/2.2-foss-2022a-CUDA-11.7.0 cffi/1.15.1-GCCcore-11.3.0 CGAL/4.14.3-gompi-2022a CGmapTools/0.1.3-foss-2022a Clair3/1.0.4-foss-2022a cma/3.3.0-foss-2022a coexist/0.3.1-foss-2022a cppy/1.2.1-GCCcore-11.3.0 dask/2022.12.0-foss-2022a dask/2022.10.0-foss-2022a deepdiff/5.8.1-GCCcore-11.3.0 DeepLabCut/2.3.6-foss-2022a-CUDA-11.7.0 DeepLabCut/2.3.6-foss-2022a deepTools/3.5.2-foss-2022a DendroPy/4.5.2-GCCcore-11.3.0 dill/0.3.6-GCCcore-11.3.0 dm-tree/0.1.8-GCCcore-11.3.0 edlib/1.3.9-GCC-11.3.0 expecttest/0.1.3-GCCcore-11.3.0 flatbuffers/2.0.7-GCCcore-11.3.0 flatbuffers-python/2.0-GCCcore-11.3.0 freebayes/1.3.7-foss-2022a-R-4.2.3 GDAL/3.5.0-foss-2022a GDAL/3.5.0-intel-2022a-PROJ-6.3.1 gensim/4.3.2-foss-2022a GitPython/3.1.27-GCCcore-11.3.0 gmpy2/2.1.2-GCC-11.3.0 GObject-Introspection/1.72.0-GCCcore-11.3.0 graph-tool/2.55-foss-2022a Graphviz/5.0.0-GCCcore-11.3.0 GROMACS/2023.3-foss-2022a-CUDA-11.7.0 GROMACS/2023.3-foss-2022a GStreamer/1.20.2-GCC-11.3.0 Gubbins/3.3.1-foss-2022a h5py/3.7.0-foss-2022a HDBSCAN/0.8.29-foss-2022a HH-suite/3.3.0-gompi-2022a Horovod/0.28.0-foss-2022a-CUDA-11.7.0-PyTorch-2.0.1 Hydra/1.3.2-GCCcore-11.3.0 hypothesis/6.46.7-GCCcore-11.3.0 imageio/2.22.2-foss-2022a imgaug/0.4.0-foss-2022a-CUDA-11.7.0 imgaug/0.4.0-foss-2022a InterProScan/5.61-93.0-foss-2022a intervaltree-python/3.1.0-GCCcore-11.3.0 IPython/8.5.0-GCCcore-11.3.0 IRkernel/1.3.2-foss-2022a-R-4.2.3 jax/0.3.23-foss-2022a jax/0.4.4-foss-2022a-CUDA-11.7.0 jax/0.3.14-foss-2022a-CUDA-11.7.0 jax/0.4.4-foss-2022a JupyterLab/3.5.0-GCCcore-11.3.0 jupyter-server/1.21.0-GCCcore-11.3.0 leidenalg/0.9.1-foss-2022a Levenshtein/0.22.0-foss-2022a lxml/4.9.1-GCCcore-11.3.0 MACS2/2.2.9.1-foss-2022a Mako/1.2.0-GCCcore-11.3.0 mandrake/1.2.2-foss-2022a matplotlib/3.5.2-foss-2022a medaka/1.11.1-foss-2022a Meson/0.62.1-GCCcore-11.3.0 mm-common/1.0.5-GCCcore-11.3.0 MNE-Python/1.3.1-foss-2022a mne-rsa/0.8-foss-2022a mpath/1.1.3-GCCcore-11.3.0 multiprocess/0.70.14-GCCcore-11.3.0 napari/0.4.17-foss-2022a natsort/8.2.0-foss-2022a netcdf4-python/1.6.1-foss-2022a networkx/2.8.4-foss-2022a NiBabel/4.0.2-foss-2022a NLTK/3.8-foss-2022a numba/0.56.4-foss-2022a numbakit-ode/0.5-foss-2022a ont-fast5-api/4.1.1-foss-2022a ont-remora/2.0.0-foss-2022a ont-remora/2.0.0-foss-2022a-CUDA-11.7.0 OpenCV/4.6.0-foss-2022a-CUDA-11.7.0-contrib OpenCV/4.6.0-foss-2022a-contrib OpenFOAM-Extend/5.0-20230821-foss-2022a OpenMDAO/3.29.0-foss-2022a OpenMM/7.7.0-foss-2022a OpenPose/1.7.0-foss-2022a-CUDA-11.7.0 openpyxl/3.0.10-GCCcore-11.3.0 ParaView/5.10.1-foss-2022a-mpi pdal-python/3.2.3-foss-2022a PETSc/3.17.4-intel-2022a PICI-LIGGGHTS/3.8.1-foss-2022a-VTK-9.2.2 Pillow/9.1.1-GCCcore-11.3.0 Pillow-SIMD/9.2.0-GCCcore-11.3.0 pkgconfig/1.5.5-GCCcore-11.3.0-python plotly.py/5.12.0-GCCcore-11.3.0 PLUMED/2.8.1-foss-2022a poetry/1.2.2-GCCcore-11.3.0 polars/0.17.12-foss-2022a poppunk/2.6.1-foss-2022a pp-sketchlib/2.1.1-foss-2022a protobuf-python/3.19.4-GCCcore-11.3.0 ptwt/0.1.4.post2-foss-2022a ptwt/0.1.4.post2-foss-2022a-CUDA-11.7.0 pybedtools/0.9.0-GCC-11.3.0 pyBigWig/0.3.18-foss-2022a pybind11/2.9.2-GCCcore-11.3.0 PyCairo/1.21.0-GCCcore-11.3.0 py-cpuinfo/9.0.0-GCCcore-11.3.0 pyCycle/4.2.1-foss-2022a pydantic/1.10.4-GCCcore-11.3.0 pydicom/2.3.0-GCCcore-11.3.0 pyfaidx/0.7.1-GCCcore-11.3.0 pyfasta/0.5.2-foss-2022a pyglotaran/0.7.2-foss-2022a PyGObject/3.42.1-GCCcore-11.3.0 pygraphviz/1.10-GCCcore-11.3.0 PyOpenGL/3.1.6-GCCcore-11.3.0 pyperlin/1.1.0-foss-2022a-CUDA-11.7.0 PyQt5/5.15.5-GCCcore-11.3.0 Pysam/0.19.1-GCC-11.3.0 Pysam/0.20.0-GCC-11.3.0 pyseer/1.3.11-foss-2022a PyTables/3.8.0-foss-2022a pytesseract/0.3.10-foss-2022a pytest-xdist/2.5.0-GCCcore-11.3.0 python-igraph/0.10.3-foss-2022a python-isal/1.1.0-GCCcore-11.3.0 python-parasail/1.3.3-foss-2022a PyTorch/1.12.1-foss-2022a-CUDA-11.7.0 PyTorch/2.0.1-foss-2022a-CUDA-11.7.0 PyTorch/1.12.1-foss-2022a PyTorch-Lightning/1.9.3-foss-2022a PyTorch-Lightning/2.0.2-foss-2022a-CUDA-11.7.0 PyTorch-Lightning/2.1.0-foss-2022a-CUDA-11.7.0 PyTorch-Lightning/1.9.3-foss-2022a-CUDA-11.7.0 pyvista/0.36.1-foss-2022a PyYAML/6.0-GCCcore-11.3.0 PyZMQ/24.0.1-GCCcore-11.3.0 Qtconsole/5.4.0-GCCcore-11.3.0 QtPy/2.3.0-GCCcore-11.3.0 QUAST/5.2.0-foss-2022a RagTag/2.1.0-foss-2022a rapidfuzz/2.13.7-foss-2022a RootPainter/0.2.27.0-foss-2022a-CUDA-11.7.0 Rosetta/3.13-foss-2022a ruamel.yaml/0.17.21-GCCcore-11.3.0 scanpy/1.9.1-foss-2022a scikit-build/0.15.0-GCCcore-11.3.0 scikit-image/0.19.3-foss-2022a scikit-learn/1.1.2-foss-2022a scikit-misc/0.1.4-foss-2022a SciPy-bundle/2022.05-intel-2022a SciPy-bundle/2022.05-foss-2022a SCons/4.4.0-GCCcore-11.3.0 scvi-tools/0.20.1-foss-2022a scvi-tools/0.20.1-foss-2022a-CUDA-11.7.0 Seaborn/0.12.1-foss-2022a SHAP/0.41.0-foss-2022a Shapely/1.8.2-foss-2022a sklearn-pandas/2.2.0-foss-2022a spaCy/3.4.4-foss-2022a Sphinx-RTD-Theme/1.3.0-GCCcore-11.3.0 statsmodels/0.13.1-foss-2022a steinbock/0.16.1-foss-2022a subunit/1.4.3-GCCcore-11.3.0 sympy/1.11.1-foss-2022a tensorboardX/2.5.1-foss-2022a TensorFlow/2.11.0-foss-2022a TensorFlow/2.11.0-foss-2022a-CUDA-11.7.0 Tkinter/3.10.4-GCCcore-11.3.0 torchvision/0.15.2-foss-2022a-CUDA-11.7.0 tqdm/4.64.0-GCCcore-11.3.0 Transformers/4.24.0-foss-2022a Transformers/4.24.0-foss-2022a-CUDA-11.7.0 umap-learn/0.5.3-foss-2022a vcflib/1.0.9-foss-2022a-R-4.2.3 VTK/9.2.2-foss-2022a Wand/0.6.11-foss-2022a wandb/0.13.6-GCC-11.3.0 WhatsHap/1.7-foss-2022a windspharm/1.7.0-foss-2022a xarray/2022.9.0-foss-2022a

Other Versions

These versions of Python are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 12th January 2023