SAMtools 1.10-GCC-8.3.0

There is a newer version of SAMtools

SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.

Accessing SAMtools 1.10-GCC-8.3.0

To load the module for SAMtools 1.10-GCC-8.3.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load SAMtools/1.10-GCC-8.3.0

BEAR Apps Version


More Information

For more information visit the SAMtools website.


This version of SAMtools has a direct dependency on: bzip2/1.0.8-GCCcore-8.3.0 cURL/7.66.0-GCCcore-8.3.0 GCC/8.3.0 ncurses/6.1-GCCcore-8.3.0 XZ/5.2.4-GCCcore-8.3.0 zlib/1.2.11-GCCcore-8.3.0

Required By

This version of SAMtools is a direct dependent of: AUGUSTUS/3.3.3-foss-2019b Bismark/0.22.3-foss-2019b CNVnator/0.4.1-foss-2019b-Python-3.7.4 FastQ_Screen/0.14.1-foss-2019b-Perl-5.30.0 funannotate/1.8.1-foss-2019b-Python-2.7.16 funannotate/1.8.1-foss-2019b-Python-3.7.4 HOMER/4.11-foss-2019b KneadData/0.7.6-foss-2019b-Python-3.7.4-Java-11 shovill/1.1.0-foss-2019b-Python-3.7.4 snippy/4.6.0-foss-2019b-Perl-5.30.0 Trinity/2.9.1-foss-2019b-Python-2.7.16 Trinity/2.9.1-foss-2019b-Python-3.7.4 vcf2maf/1.6.18-foss-2019b-Perl-5.30.0

Other Versions

These versions of SAMtools are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 2nd March 2020