SAMtools 1.17-GCC-12.2.0

SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.

Accessing SAMtools 1.17-GCC-12.2.0

To load the module for SAMtools 1.17-GCC-12.2.0 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load SAMtools/1.17-GCC-12.2.0

BEAR Apps Version

2020b

More Information

For more information visit the SAMtools website.

Dependencies

This version of SAMtools has a direct dependency on: bzip2/1.0.8-GCCcore-12.2.0 cURL/7.86.0-GCCcore-12.2.0 GCC/12.2.0 ncurses/6.3-GCCcore-12.2.0 XZ/5.2.7-GCCcore-12.2.0 zlib/1.2.12-GCCcore-12.2.0

Required By

This version of SAMtools is a direct dependent of: AUGUSTUS/3.5.0-foss-2022b sequenza-utils/3.0.0-foss-2022b ShortStack/4.0.2-foss-2022b ShortTracks/1.1-foss-2022b strucVis/0.7-foss-2022b Trinity/2.15.1-foss-2022b Trinotate/4.0.2-foss-2022b

Other Versions

These versions of SAMtools are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 9th August 2023