SingleR 1.0.6-foss-2019b-R-3.6.2

A computational method for unbiased cell type recognition of scRNA-seq. SingleR leverages reference transcriptomic datasets of pure cell types to infer the cell of origin of each of the single cells independently. SingleR's annotations combined with Seurat, a processing and analysis package designed for scRNA-seq, provide a powerful tool for the investigation of scRNA-seq data

Accessing SingleR 1.0.6-foss-2019b-R-3.6.2

To load the module for SingleR 1.0.6-foss-2019b-R-3.6.2 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load SingleR/1.0.6-foss-2019b-R-3.6.2

BEAR Apps Version

2020b

Extensions

  • ExperimentHub 1.12.0
  • SingleR 1.0.6

More Information

For more information visit the SingleR website.

Dependencies

This version of SingleR has a direct dependency on: foss/2019b R/3.6.2-foss-2019b R-bundle-Bioconductor/3.10-foss-2019b-R-3.6.2

Required By

This version of SingleR is a direct dependent of: BEAR-R-bio/2019b-foss-2019b-R-3.6.2

Last modified on 22nd April 2020