SpliceAI 1.3-foss-2019a-Python-3.7.2
A deep learning-based tool to identify splice variantsAccessing SpliceAI 1.3-foss-2019a-Python-3.7.2
To load the module for SpliceAI 1.3-foss-2019a-Python-3.7.2 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load SpliceAI/1.3-foss-2019a-Python-3.7.2
There is a GPU enabled version of this module: SpliceAI 1.3-fosscuda-2019a-Python-3.7.2
BEAR Apps Version
Extensions
- pyfaidx 0.5.5.2
- SpliceAI 1.3
More Information
For more information visit the SpliceAI website.
Dependencies
This version of SpliceAI has a direct dependency on: Biopython/1.73-foss-2019a foss/2019a Keras/2.2.4-foss-2019a-Python-3.7.2 Pysam/0.15.2-foss-2019a Python/3.7.2-GCCcore-8.2.0
Other Versions
These versions of SpliceAI are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
Version | BEAR Apps Version |
---|---|
1.3-fosscuda-2019a-Python-3.7.2 | 2019a |
Last modified on 16th December 2019