BEAR Applications

VEP 96.0-foss-2019a-Perl-5.28.1

There is a newer version of VEP

VEP determines the effect of your variants (SNPs, insertions, deletions, CNVs or structural variants) on genes, transcripts, and protein sequence, as well as regulatory regions.

Accessing VEP 96.0-foss-2019a-Perl-5.28.1

To load the module for VEP 96.0-foss-2019a-Perl-5.28.1 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load VEP/96.0-foss-2019a-Perl-5.28.1

BEAR Apps Version

2020b

Extensions

• Archive::Zip 1.67
• Bio::EnsEMBL::XS 2.3.2
• ExtUtils::CppGuess 0.20
• ExtUtils::MakeMaker 7.38
• Set::IntervalTree 0.12
• SUPER 1.20190531
• Test::MockModule 0.171.0

More Information

For more information visit the VEP website.

Dependencies

This version of VEP has a direct dependency on: Bio-DB-BigFile/1.07-foss-2019a-Perl-5.28.1 Bio-DB-HTS/3.01-GCC-8.2.0-2.31.1-Perl-5.28.1 BioPerl/1.7.2-GCCcore-8.2.0-Perl-5.28.1 DBD-mysql/4.050-foss-2019a-Perl-5.28.1 foss/2019a Perl/5.28.1-GCCcore-8.2.0

Other Versions

These versions of VEP are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 3rd December 2019