WhatsHap 0.18-foss-2018b-Python-3.6.6WhatsHap is a software for phasing genomic variants using DNA sequencing reads, also called read-based phasing or haplotype assembly. It is especially suitable for long reads, but works also well with short reads.
Accessing WhatsHap 0.18-foss-2018b-Python-3.6.6
To load the module for WhatsHap 0.18-foss-2018b-Python-3.6.6 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load WhatsHap/0.18-foss-2018b-Python-3.6.6
BEAR Apps Version
- pyfaidx 0.5.5.2
- PyVCF 0.6.8
- whatshap 0.18
- xopen 0.7.3
For more information visit the WhatsHap website.
This version of WhatsHap has a direct dependency on: Biopython/1.72-foss-2018b-Python-3.6.6 foss/2018b networkx/2.2-foss-2018b-Python-3.6.6 Pysam/0.15.1-foss-2018b-Python-3.6.6 Python/3.6.6-foss-2018b
These versions of WhatsHap are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
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Last modified on 25th November 2019