WhatsHap 1.7-foss-2022aWhatsHap is a software for phasing genomic variants using DNA sequencing reads, also called read-based phasing or haplotype assembly. It is especially suitable for long reads, but works also well with short reads.
Accessing WhatsHap 1.7-foss-2022a
To load the module for WhatsHap 1.7-foss-2022a please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):
module load WhatsHap/1.7-foss-2022a
BEAR Apps Version
- pulp 2.7.0
- WhatsHap 1.7
- xopen 1.5.0
For more information visit the WhatsHap website.
This version of WhatsHap has a direct dependency on: Biopython/1.79-foss-2022a foss/2022a networkx/2.8.4-foss-2022a pyfaidx/0.7.1-GCCcore-11.3.0 Pysam/0.19.1-GCC-11.3.0 Python/3.10.4-GCCcore-11.3.0 python-isal/1.1.0-GCCcore-11.3.0 SciPy-bundle/2022.05-foss-2022a Yasm/1.3.0-GCCcore-11.3.0
Last modified on 14th November 2023