ariba 2.13.5-foss-2018b-Python-3.6.6

ARIBA is a tool that identifies antibiotic resistance genes by running local assemblies. It can also be used for MLST calling.

Accessing ariba 2.13.5-foss-2018b-Python-3.6.6

To load the module for ariba 2.13.5-foss-2018b-Python-3.6.6 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load ariba/2.13.5-foss-2018b-Python-3.6.6

BEAR Apps Version

2020b

Extensions

  • ariba 2.13.5
  • beautifulsoup4 4.7.1
  • pyfastaq 3.17.0
  • pymummer 0.10.3
  • soupsieve 1.9.1

More Information

For more information visit the ariba website.

Dependencies

This version of ariba has a direct dependency on: Biopython/1.72-foss-2018b-Python-3.6.6 Bowtie2/2.3.4.2-foss-2018b CD-HIT/4.8.1-foss-2018b DendroPy/4.4.0-foss-2018b-Python-3.6.6 foss/2018b matplotlib/3.0.0-foss-2018b-Python-3.6.6 MUMmer/4.0.0beta2-foss-2018b Pysam/0.15.1-foss-2018b-Python-3.6.6 Python/3.6.6-foss-2018b

Last modified on 3rd June 2019