cell2location 0.05-alpha-fosscuda-2020b

There is a newer version of cell2location

Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)

Accessing cell2location 0.05-alpha-fosscuda-2020b

To load the module for cell2location 0.05-alpha-fosscuda-2020b please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load cell2location/0.05-alpha-fosscuda-2020b

There is a CPU version of this module: cell2location 0.05-alpha-foss-2020b

BEAR Apps Version



EL8-haswell (GPUs: NVIDIA P100)

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR Cloud and CaStLeS VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.


  • anndata 0.7.5
  • annoy 1.17.0
  • bbknn 1.3.12
  • cell2location-0.05-alpha
  • descartes 1.1.0
  • get_version 2.1
  • ipykernel 5.3.4
  • legacy-api-wrap-1.2
  • loompy 3.0.6
  • louvain 0.7.0
  • mizani 0.7.1
  • natsort 7.1.0
  • nose 1.3.7
  • numpy-groupies-0.9.13
  • opt-einsum-3.3.0
  • palettable 3.3.0
  • plotnine 0.7.0
  • pytoml 0.1.21
  • scanpy 1.6.0
  • sinfo 0.3.1
  • stdlib-list-0.8.0

More Information

For more information visit the cell2location website.


This version of cell2location has a direct dependency on: CMake/3.18.4-GCCcore-10.2.0 dill/0.3.3-GCCcore-10.2.0 fosscuda/2020b hyperopt/0.2.5-fosscuda-2020b IPython/7.18.1-GCCcore-10.2.0 Java/11 leidenalg/0.8.3-fosscuda-2020b libgpuarray/0.7.6-fosscuda-2020b libtool/2.4.6-GCCcore-10.2.0 matplotlib/3.3.3-fosscuda-2020b numba/0.52.0-fosscuda-2020b PyMC3/3.11.1-fosscuda-2020b pyro-api/0.1.2-fosscuda-2020b pyro-ppl/1.5.2-fosscuda-2020b PyTables/3.6.1-fosscuda-2020b Python/3.8.6-GCCcore-10.2.0 PyTorch/1.7.1-fosscuda-2020b request/2.88.1-fosscuda-2020b-nodejs-12.19.0 SciPy-bundle/2020.11-fosscuda-2020b Seaborn/0.11.1-fosscuda-2020b statsmodels/0.12.1-fosscuda-2020b Theano/1.1.2-fosscuda-2020b-PyMC umap-learn/0.4.6-fosscuda-2020b

Other Versions

These versions of cell2location are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 28th July 2021