chiron 0.4.2-foss-2018b-Python-3.6.6

A basecaller for Oxford Nanopore Technologies' sequencers

Accessing chiron 0.4.2-foss-2018b-Python-3.6.6

To load the module for chiron 0.4.2-foss-2018b-Python-3.6.6 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load chiron/0.4.2-foss-2018b-Python-3.6.6

There is a GPU enabled version of this module: chiron 0.4.2-fosscuda-2018b-Python-3.6.6

BEAR Apps Version

2020b

Extensions

  • chiron 0.4.2
  • statsmodels 0.9.0
  • tqdm 4.28.1

More Information

For more information visit the chiron website.

Dependencies

This version of chiron has a direct dependency on: foss/2018b h5py/2.8.0-foss-2018b-Python-3.6.6 mappy/2.15-foss-2018b-Python-3.6.6 Python/3.6.6-foss-2018b TensorFlow/1.10.1-foss-2018b-Python-3.6.6

Other Versions

These versions of chiron are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version BEAR Apps Version
0.4.2-fosscuda-2018b-Python-3.6.6 2018b

Last modified on 3rd June 2019