Accessing flappie 1.1.0-foss-2018b
To load the module for flappie 1.1.0-foss-2018b please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):
module load flappie/1.1.0-foss-2018b
BEAR Apps Version
RunnieRunnie is an experimental basecaller that works in 'run-length encoded' space. Basecalling using runnie is a two-stage process: firstly, a .run file is created containing the Run-Length Compressed (RLC) basecall, along information about the likely length of each run, then this is decoded into a fasta basecall. The executable
runnieperforms the initial RLC basecall, which is then processed by the
For more information visit the flappie website.
Last modified on 4th June 2019