There is a newer version of flappieFlip-flop basecaller for Oxford Nanopore reads
Accessing flappie 1.1.0-foss-2018b
To load the module for flappie 1.1.0-foss-2018b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load flappie/1.1.0-foss-2018b
BEAR Apps Version
RunnieRunnie is an experimental basecaller that works in 'run-length encoded' space. Basecalling using runnie is a two-stage process: firstly, a .run file is created containing the Run-Length Compressed (RLC) basecall, along information about the likely length of each run, then this is decoded into a fasta basecall. The executable
runnieperforms the initial RLC basecall, which is then processed by the
For more information visit the flappie website.
This version of flappie has a direct dependency on: foss/2018b HDF5/1.10.2-foss-2018b
These versions of flappie are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
|Version||BEAR Apps Version|
Last modified on 4th June 2019