hypervolume 2.0.12-foss-2020b-R-4.0.3

Includes algorithms to assess alpha and beta diversity in all their dimensions (taxonomic, phylogenetic and functional). It allows performing a number of analyses based on species identities/abundances, phylogenetic/functional distances, trees, convex-hulls or kernel density n-dimensional hypervolumes depicting species relationships. Cardoso et al. (2015) .

Accessing hypervolume 2.0.12-foss-2020b-R-4.0.3

To load the module for hypervolume 2.0.12-foss-2020b-R-4.0.3 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load hypervolume/2.0.12-foss-2020b-R-4.0.3

BEAR Apps Version

2020b

Architectures

EL8-cascadelakeEL8-haswellUbuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

Extensions

  • hitandrun-0.5-5
  • hypervolume 2.0.12
  • pdist 1.2
  • rcdd-1.2-2

More Information

For more information visit the hypervolume website.

Dependencies

This version of hypervolume has a direct dependency on: foss/2020b R/4.0.3-foss-2020b rgeos/0.5-5-foss-2020b-R-4.0.3

Required By

This version of hypervolume is a direct dependent of: BAT/2.6.1-foss-2020b-R-4.0.3 BAT/2.7.1-foss-2020b-R-4.0.3 BAT/2.8.1-foss-2020b-R-4.0.3

Last modified on 23rd July 2021