phateR 1.0.7-foss-2020a-R-4.0.0-Python-3.8.2

PHATE (Potential of Heat-diffusion for Affinity-based Trajectory Embedding) is a tool for visualizing high dimensional single-cell data with natural progressions or trajectories. PHATE uses a novel conceptual framework for learning and visualizing the manifold inherent to biological systems in which smooth transitions mark the progressions of cells from one state to another.

Accessing phateR 1.0.7-foss-2020a-R-4.0.0-Python-3.8.2

To load the module for phateR 1.0.7-foss-2020a-R-4.0.0-Python-3.8.2 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load phateR/1.0.7-foss-2020a-R-4.0.0-Python-3.8.2

BEAR Apps Version

2020b

Extensions

  • phateR 1.0.7

More Information

For more information visit the phateR website.

Dependencies

This version of phateR has a direct dependency on: foss/2020a PHATE/1.0.7-foss-2020a-Python-3.8.2 Python/3.8.2-GCCcore-9.3.0 R/4.0.0-foss-2020a

Last modified on 9th March 2021