pyEMMA 2.5.5-foss-2018b-Python-3.6.6

PyEMMA is a Python library for the estimation, validation and analysis Markov models of molecular kinetics and other kinetic and thermodynamic models from molecular dynamics (MD) data.

Accessing pyEMMA 2.5.5-foss-2018b-Python-3.6.6

To load the module for pyEMMA 2.5.5-foss-2018b-Python-3.6.6 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load pyEMMA/2.5.5-foss-2018b-Python-3.6.6

BEAR Apps Version



  • bhmm 0.6.3
  • dill 0.2.9
  • mdtraj 1.9.2
  • msmtools 1.2.4
  • multiprocess 0.70.7
  • pathos 0.2.3
  • pox 0.2.5
  • ppft
  • pyEMMA 2.5.5
  • thermotools 0.2.7
  • tqdm 4.31.1

More Information

For more information visit the pyEMMA website.


This version of pyEMMA has a direct dependency on: foss/2018b h5py/2.8.0-foss-2018b-Python-3.6.6 IPython/6.4.0-foss-2018b-Python-3.6.6 psutil/5.4.7-foss-2018b-Python-3.6.6 pybind11/2.2.4-foss-2018b-Python-3.6.6 pyblosc/1.8.1-foss-2018b-Python-3.6.6 PyTables/3.4.4-foss-2018b-Python-3.6.6 Python/3.6.6-foss-2018b PyYAML/3.13-foss-2018b-Python-3.6.6

Last modified on 5th June 2019