scCATCH 2.1-foss-2020a-R-4.0.0

single cell Cluster-based Annotation Toolkit for Cellular Heterogeneity (scCATCH) from cluster marker genes identification to cluster annotation based on evidence-based score by matching the identified potential marker genes with known cell markers in tissue-specific cell taxonomy reference database (CellMatch).

Accessing scCATCH 2.1-foss-2020a-R-4.0.0

To load the module for scCATCH 2.1-foss-2020a-R-4.0.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load scCATCH/2.1-foss-2020a-R-4.0.0

BEAR Apps Version

2020b

Extensions

  • scCATCH 2.1

More Information

For more information visit the scCATCH website.

Dependencies

This version of scCATCH has a direct dependency on: foss/2020a R/4.0.0-foss-2020a Seurat/4.0.0-foss-2020a-R-4.0.0

Last modified on 21st April 2021