scVelo 0.1.25-foss-2019b-Python-3.7.4

There is a newer version of scVelo

scVelo is a scalable toolkit for estimating and analyzing RNA velocities in single cells using dynamical modeling.

Accessing scVelo 0.1.25-foss-2019b-Python-3.7.4

To load the module for scVelo 0.1.25-foss-2019b-Python-3.7.4 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load scVelo/0.1.25-foss-2019b-Python-3.7.4

BEAR Apps Version

2020b

Extensions

  • anndata 0.7.1
  • Cycler 0.10.0
  • get_version 2.1
  • kiwisolver 1.2.0
  • legacy-api-wrap-1.2
  • loompy 3.0.6
  • matplotlib 3.2.1
  • natsort 7.0.1
  • numpy-groupies-0.9.10
  • scanpy 1.4.6
  • scVelo 0.1.25
  • umap-learn-0.3.10

More Information

For more information visit the scVelo website.

Dependencies

This version of scVelo has a direct dependency on: foss/2019b freetype/2.10.1-GCCcore-8.3.0 h5py/2.10.0-foss-2019b-Python-3.7.4 libpng/1.6.37-GCCcore-8.3.0 networkx/2.4-foss-2019b-Python-3.7.4 numba/0.47.0-foss-2019b-Python-3.7.4 PyTables/3.6.1-foss-2019b-Python-3.7.4 Python/3.7.4-GCCcore-8.3.0 scikit-learn/0.21.3-foss-2019b-Python-3.7.4 SciPy-bundle/2019.10-foss-2019b-Python-3.7.4 Seaborn/0.10.0-foss-2019b-Python-3.7.4 statsmodels/0.11.0-foss-2019b-Python-3.7.4 Tkinter/3.7.4-GCCcore-8.3.0 tqdm/4.41.1-GCCcore-8.3.0

Other Versions

These versions of scVelo are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 30th April 2020