BEAR Applications

sequenza 3.0.0-foss-2020a-R-4.0.0

There is a newer version of sequenza

Tools to analyze genomic sequencing data from paired normal-tumor samples, including cellularity and ploidy estimation; mutation and copy number (allele-specific and total copy number) detection, quantification and visualization.

Accessing sequenza 3.0.0-foss-2020a-R-4.0.0

To load the module for sequenza 3.0.0-foss-2020a-R-4.0.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load sequenza/3.0.0-foss-2020a-R-4.0.0

BEAR Apps Version

2020b

Extensions

• copynumber 1.28.0
• iotools-0.3-1
• iotools-0.3-1
• seqminer 8.0
• sequenza 3.0.0
• squash 1.0.9

More Information

For more information visit the sequenza website.

Dependencies

This version of sequenza has a direct dependency on: foss/2020a Pandoc/2.10 R/4.0.0-foss-2020a R-bundle-Bioconductor/3.11-foss-2020a-R-4.0.0

Required By

This version of sequenza is a direct dependent of: sequenza-utils/3.0.0-foss-2020a-Python-3.8.2-R-4.0.0

Other Versions

These versions of sequenza are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 2nd June 2021