BEAR Applications

snakemake 5.31.1-foss-2020a-Python-3.8.2

The Snakemake workflow management system is a tool to create reproducible and scalable data analyses.

Accessing snakemake 5.31.1-foss-2020a-Python-3.8.2

To load the module for snakemake 5.31.1-foss-2020a-Python-3.8.2 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load snakemake/5.31.1-foss-2020a-Python-3.8.2

BEAR Apps Version

2020b

Extensions

• amply 0.1.4
• ConfigArgParse 1.2.3
• datrie 0.8.2
• ipython_genutils 0.2.0
• jsonschema 3.2.0
• jupyter-core-4.6.3
• nbformat 5.0.8
• PuLP 2.3
• pyrsistent 0.17.3
• ratelimiter 1.2.0.post0
• snakemake 5.31.1
• toposort 1.5
• traitlets 5.0.5
• wrapt 1.12.1

More Information

For more information visit the snakemake website.

Dependencies

This version of snakemake has a direct dependency on: foss/2020a GitPython/3.1.9-GCCcore-9.3.0-Python-3.8.2 Python/3.8.2-GCCcore-9.3.0 PyYAML/5.3-GCCcore-9.3.0 SciPy-bundle/2020.03-foss-2020a-Python-3.8.2

Required By

This version of snakemake is a direct dependent of: DROP/1.0.3-foss-2020a-Python-3.8.2-R-4.0.0

Other Versions

These versions of snakemake are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 15th March 2021