srst2 0.2.0-foss-2018b-Python-2.7.15

Short Read Sequence Typing for Bacterial Pathogens. This program is designed to take Illumina sequence data, a MLST database and/or a database of gene sequences (e.g. resistance genes, virulence genes, etc) and report the presence of STs and/or reference genes.

Accessing srst2 0.2.0-foss-2018b-Python-2.7.15

To load the module for srst2 0.2.0-foss-2018b-Python-2.7.15 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load srst2/0.2.0-foss-2018b-Python-2.7.15

BEAR Apps Version


More Information

For more information visit the srst2 website.


This version of srst2 has a direct dependency on: Bowtie2/ foss/2018b Python/2.7.15-foss-2018b SAMtools/0.1.18-foss-2018b

Last modified on 5th June 2019