srst2 0.2.0-foss-2018b-Python-2.7.15Short Read Sequence Typing for Bacterial Pathogens. This program is designed to take Illumina sequence data, a MLST database and/or a database of gene sequences (e.g. resistance genes, virulence genes, etc) and report the presence of STs and/or reference genes.
Accessing srst2 0.2.0-foss-2018b-Python-2.7.15
To load the module for srst2 0.2.0-foss-2018b-Python-2.7.15 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load srst2/0.2.0-foss-2018b-Python-2.7.15
BEAR Apps Version
For more information visit the srst2 website.
This version of srst2 has a direct dependency on: Bowtie2/220.127.116.11-foss-2018b foss/2018b Python/2.7.15-foss-2018b SAMtools/0.1.18-foss-2018b
Last modified on 5th June 2019