BEAR Applications

transIndel 7098bd6-foss-2018b-Python-2.7.15-ScanNeo

transIndel is used to detect indels (insertions and deletions) from DNA-seq or RNA-seq data by parsing chimiric alignments from BWA-MEM.

Accessing transIndel 7098bd6-foss-2018b-Python-2.7.15-ScanNeo

To load the module for transIndel 7098bd6-foss-2018b-Python-2.7.15-ScanNeo please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load transIndel/7098bd6-foss-2018b-Python-2.7.15-ScanNeo

BEAR Apps Version

2020b

More Information

For more information visit the transIndel website.

Dependencies

This version of transIndel has a direct dependency on: foss/2018b HTSeq/0.11.0-foss-2018b-Python-2.7.15 Pysam/0.15.1-foss-2018b-Python-2.7.15 Python/2.7.15-foss-2018b

Other Versions

These versions of transIndel are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 16th August 2019