Cellpose 0.6.5-foss-2021a

There is a newer version of Cellpose

a generalist algorithm for cellular segmentation

Accessing Cellpose 0.6.5-foss-2021a

To load the module for Cellpose 0.6.5-foss-2021a please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load Cellpose/0.6.5-foss-2021a

There is a GPU enabled version of this module: Cellpose 0.6.5-foss-2021a-CUDA-11.3.1

BEAR Apps Version

2020h

Extensions

  • Cellpose 0.6.5
  • natsort 7.1.1
  • pyqtgraph 0.12.2
  • tifffile 2021.8.8

More Information

For more information visit the Cellpose website.

Dependencies

This version of Cellpose has a direct dependency on: foss/2021a numba/0.53.1-foss-2021a OpenCV/4.5.3-foss-2021a-contrib PyQt5/5.15.4-GCCcore-10.3.0 Python/3.9.5-GCCcore-10.3.0 PyTorch/1.9.1-foss-2021a-imkl tqdm/4.61.2-GCCcore-10.3.0

Other Versions

These versions of Cellpose are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 11th October 2021