BEAR Applications

Clairvoyante 1.02-foss-2019a-Python-3.7.2

Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing

Accessing Clairvoyante 1.02-foss-2019a-Python-3.7.2

To load the module for Clairvoyante 1.02-foss-2019a-Python-3.7.2 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load Clairvoyante/1.02-foss-2019a-Python-3.7.2

There is a GPU enabled version of this module: Clairvoyante 1.02-fosscuda-2019a-Python-3.7.2

BEAR Apps Version

2020h

More Information

For more information visit the Clairvoyante website.

Dependencies

This version of Clairvoyante has a direct dependency on: foss/2019a intervaltree/3.0.2-foss-2019a-Python-3.7.2 matplotlib/3.0.3-foss-2019a-Python-3.7.2 pyblosc/1.8.1-foss-2019a-Python-3.7.2 Python/3.7.2-GCCcore-8.2.0 TensorFlow/1.13.1-foss-2019a-Python-3.7.2

Other Versions

These versions of Clairvoyante are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 20th August 2019