There is a newer version of GATK
The Genome Analysis Toolkit or GATK is a software package developed at the Broad Institute
to analyse next-generation resequencing data. The toolkit offers a wide variety of tools,
with a primary focus on variant discovery and genotyping as well as strong emphasis on
data quality assurance. Its robust architecture, powerful processing engine and
high-performance computing features make it capable of taking on projects of any size.
Accessing GATK 220.127.116.11-GCCcore-10.2.0-Java-11
To load the module for GATK 18.104.22.168-GCCcore-10.2.0-Java-11 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):
module load GATK/22.214.171.124-GCCcore-10.2.0-Java-11
BEAR Apps Version
For more information visit the GATK website.
This version of GATK has a direct dependency on:
These versions of GATK are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
Last modified on 3rd August 2021