HISAT2 2.2.1-foss-2019bHISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) against the general human population (as well as against a single reference genome).
Accessing HISAT2 2.2.1-foss-2019b
To load the module for HISAT2 2.2.1-foss-2019b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load HISAT2/2.2.1-foss-2019b
BEAR Apps Version
For more information visit the HISAT2 website.
This version of HISAT2 has a direct dependency on: foss/2019b ncbi-vdb/2.10.4-gompi-2019b NGS/2.10.4-GCCcore-8.3.0-Java-11
This version of HISAT2 is a direct dependent of: funannotate/1.8.1-foss-2019b-Python-2.7.16 funannotate/1.8.1-foss-2019b-Python-3.7.4
These versions of HISAT2 are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
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Last modified on 12th October 2020