There is a newer version of NiBabelNiBabel provides read/write access to some common medical and neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2 and later), GIFTI, NIfTI1, NIfTI2, MINC1, MINC2, MGH and ECAT as well as Philips PAR/REC. We can read and write Freesurfer geometry, and read Freesurfer morphometry and annotation files. There is some very limited support for DICOM. NiBabel is the successor of PyNIfTI.
Accessing NiBabel 3.2.1-foss-2020a-Python-3.8.2
To load the module for NiBabel 3.2.1-foss-2020a-Python-3.8.2 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load NiBabel/3.2.1-foss-2020a-Python-3.8.2
There is a GPU enabled version of this module: NiBabel 3.2.1-fosscuda-2020a-Python-3.8.2
BEAR Apps Version
- bz2file 0.98
- nibabel 3.2.1
For more information visit the NiBabel website.
This version of NiBabel has a direct dependency on: foss/2020a Pillow/7.0.0-GCCcore-9.3.0-Python-3.8.2 pydicom/2.1.2-GCCcore-9.3.0-Python-3.8.2 Python/3.8.2-GCCcore-9.3.0 SciPy-bundle/2020.03-foss-2020a-Python-3.8.2
These versions of NiBabel are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
Last modified on 21st December 2021