BEAR Applications

PHATE 1.0.7-foss-2020a-Python-3.8.2

There is a newer version of PHATE

PHATE (Potential of Heat-diffusion for Affinity-based Trajectory Embedding) is a tool for visualizing high dimensional single-cell data with natural progressions or trajectories. PHATE uses a novel conceptual framework for learning and visualizing the manifold inherent to biological systems in which smooth transitions mark the progressions of cells from one state to another.

Accessing PHATE 1.0.7-foss-2020a-Python-3.8.2

To load the module for PHATE 1.0.7-foss-2020a-Python-3.8.2 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load PHATE/1.0.7-foss-2020a-Python-3.8.2

BEAR Apps Version

2020h

Extensions

• Deprecated 1.2.11
• graphtools 1.5.2
• phate 1.0.7
• PyGSP 0.5.1
• s-gd2-1.8
• scprep 1.0.13
• tasklogger 1.0.0
• wrapt 1.12.1

More Information

For more information visit the PHATE website.

Dependencies

This version of PHATE has a direct dependency on: foss/2020a matplotlib/3.2.1-foss-2020a-Python-3.8.2 Python/3.8.2-GCCcore-9.3.0 scikit-learn/0.23.2-foss-2020a-Python-3.8.2 SciPy-bundle/2020.03-foss-2020a-Python-3.8.2

Required By

This version of PHATE is a direct dependent of: phateR/1.0.7-foss-2020a-R-4.0.0-Python-3.8.2

Other Versions

These versions of PHATE are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 9th March 2021