There is a newer version of RNA-SeQCRNA-SeQC is a java program which computes a series of quality control metrics for RNA-seq data. The input can be one or more BAM files. The output consists of HTML reports and tab delimited files of metrics data. This program can be valuable for comparing sequencing quality across different samples or experiments to evaluate different experimental parameters. It can also be run on individual samples as a means of quality control before continuing with downstream analysis.
Accessing RNA-SeQC 1.1.8-foss-2019b-Java-11
To load the module for RNA-SeQC 1.1.8-foss-2019b-Java-11 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load RNA-SeQC/1.1.8-foss-2019b-Java-11
BEAR Apps Version
For more information visit the RNA-SeQC website.
This version of RNA-SeQC has a direct dependency on: BWA/0.7.17-GCC-8.3.0 foss/2019b Java/11
This version of RNA-SeQC is a direct dependent of: gtex-pipeline/gtex_v8-foss-2019b-Python-3.7.4-R-3.6.2
These versions of RNA-SeQC are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
|Version||BEAR Apps Version|
Last modified on 17th June 2020