SeuratDisk 0.0.0.9018-foss-2020a-R-4.0.0

The h5Seurat file format is specifically designed for the storage and analysis of multi-modal single-cell and spatially-resolved expression experiments, for example, from CITE-seq or 10X Visium technologies. It holds all molecular information and associated metadata, including (for example) nearest-neighbor graphs, dimensional reduction information, spatial coordinates and image data, and cluster labels. We also support rapid and on-disk conversion between h5Seurat and AnnData objects, with the goal of enhancing interoperability between Seurat and Scanpy.

Accessing SeuratDisk 0.0.0.9018-foss-2020a-R-4.0.0

To load the module for SeuratDisk 0.0.0.9018-foss-2020a-R-4.0.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load SeuratDisk/0.0.0.9018-foss-2020a-R-4.0.0

BEAR Apps Version

2020h

Extensions

  • SeuratDisk 003cdf0221e4ecd7a87e09e92e8f364ca782c2b6

More Information

For more information visit the SeuratDisk website.

Dependencies

This version of SeuratDisk has a direct dependency on: foss/2020a R/4.0.0-foss-2020a Seurat/4.0.0-foss-2020a-R-4.0.0

Last modified on 3rd February 2021