SigProfilerMatrixGenerator 1.1.7-foss-2019b-Python-3.7.4

SigProfilerMatrixGenerator is a python framework that creates mutational matrices for somatic mutations. This tool works to identify and categorize the mutations based on possible single nucleotide variants (SNVs), double base substitutions (DBS), and insertions/deletions and provides further transcriptional strand bias categorization. It downsizes the generated mutations to parts of the genome like the exome or a custom BED file to help identify true mutational signatures within a genome. SigProfilerMatrixGenerator seamlessly integrates with other SigProfiler tools.

Accessing SigProfilerMatrixGenerator 1.1.7-foss-2019b-Python-3.7.4

To load the module for SigProfilerMatrixGenerator 1.1.7-foss-2019b-Python-3.7.4 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load SigProfilerMatrixGenerator/1.1.7-foss-2019b-Python-3.7.4

BEAR Apps Version

2020h

Extensions

  • SigProfilerMatrixGenerator 1.1.7
  • sigProfilerPlotting 1.1.0

More Information

For more information visit the SigProfilerMatrixGenerator website.

Dependencies

This version of SigProfilerMatrixGenerator has a direct dependency on: foss/2019b matplotlib/3.1.1-foss-2019b-Python-3.7.4 Python/3.7.4-GCCcore-8.3.0 SciPy-bundle/2019.10-foss-2019b-Python-3.7.4 statsmodels/0.11.0-foss-2019b-Python-3.7.4

Required By

This version of SigProfilerMatrixGenerator is a direct dependent of: SigProfilerMatrixGeneratorR/1.1-foss-2019b-R-3.6.2-Python-3.7.4

Last modified on 6th March 2020