BEAR Applications

SquiggleKit 4a8abb5-foss-2019b-Python-2.7.16

A toolkit for accessing and manipulating nanopore signal data

Accessing SquiggleKit 4a8abb5-foss-2019b-Python-2.7.16

To load the module for SquiggleKit 4a8abb5-foss-2019b-Python-2.7.16 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load SquiggleKit/4a8abb5-foss-2019b-Python-2.7.16

BEAR Apps Version

2020h

More Information

For more information visit the SquiggleKit website.

Dependencies

This version of SquiggleKit has a direct dependency on: foss/2019b h5py/2.10.0-foss-2019b-Python-2.7.16 matplotlib/2.2.5-foss-2019b-Python-2.7.16 mlpy/3.5.0-foss-2019b-Python-2.7.16 ont-fast5-api/2.0.1-foss-2019b-Python-2.7.16 Python/2.7.16-GCCcore-8.3.0 scikit-learn/0.20.4-foss-2019b-Python-2.7.16 Scrappie/1.4.1-foss-2019b-Python-2.7.16

Other Versions

These versions of SquiggleKit are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 28th July 2020