TransDecoder 5.5.0-foss-2019b-Perl-5.30.0

TransDecoder identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly using Trinity, or constructed based on RNA-Seq alignments to the genome using Tophat and Cufflinks.

Accessing TransDecoder 5.5.0-foss-2019b-Perl-5.30.0

To load the module for TransDecoder 5.5.0-foss-2019b-Perl-5.30.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load TransDecoder/5.5.0-foss-2019b-Perl-5.30.0

BEAR Apps Version

2020h

More Information

For more information visit the TransDecoder website.

Dependencies

This version of TransDecoder has a direct dependency on: CD-HIT/4.8.1-GCC-8.3.0 foss/2019b Perl/5.30.0-GCCcore-8.3.0

Last modified on 24th August 2022