Trimmomatic 0.39-Java-11

Trimmomatic performs a variety of useful trimming tasks for illumina paired-end and single ended data.The selection of trimming steps and their associated parameters are supplied on the command line.

Accessing Trimmomatic 0.39-Java-11

To load the module for Trimmomatic 0.39-Java-11 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load Trimmomatic/0.39-Java-11

BEAR Apps Version


More Information

For more information visit the Trimmomatic website.


This version of Trimmomatic has a direct dependency on: Java/11

Required By

This version of Trimmomatic is a direct dependent of: funannotate/1.8.1-foss-2019b-Python-2.7.16 funannotate/1.8.1-foss-2019b-Python-3.7.4 KneadData/0.7.6-foss-2019b-Python-3.7.4-Java-11 shovill/1.1.0-foss-2019b-Python-3.7.4

Other Versions

These versions of Trimmomatic are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version BEAR Apps Version
0.38-Java-1.8 2019a

Last modified on 10th June 2020