There is a newer version of WhatsHapWhatsHap is a software for phasing genomic variants using DNA sequencing reads, also called read-based phasing or haplotype assembly. It is especially suitable for long reads, but works also well with short reads.
Accessing WhatsHap 0.18-foss-2019a-Python-3.7.2
To load the module for WhatsHap 0.18-foss-2019a-Python-3.7.2 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load WhatsHap/0.18-foss-2019a-Python-3.7.2
BEAR Apps Version
- pyfaidx 0.5.5.2
- PyVCF 0.6.8
- WhatsHap 0.18
- xopen 0.7.3
For more information visit the WhatsHap website.
This version of WhatsHap has a direct dependency on: Biopython/1.73-foss-2019a foss/2019a networkx/2.3-foss-2019a-Python-3.7.2 Pysam/0.15.2-foss-2019a Python/3.7.2-GCCcore-8.2.0
These versions of WhatsHap are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
|Version||BEAR Apps Version|
Last modified on 22nd July 2019