canu 2.2-GCCcore-11.3.0

Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II or Oxford Nanopore MinION). Canu is a hierarchical assembly pipeline which runs in four steps: Detect overlaps in high-noise sequences using MHAP Generate corrected sequence consensus Trim corrected sequences Assemble trimmed corrected sequences

Accessing canu 2.2-GCCcore-11.3.0

To load the module for canu 2.2-GCCcore-11.3.0 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load canu/2.2-GCCcore-11.3.0

BEAR Apps Version

2020h

More Information

For more information visit the canu website.

Dependencies

This version of canu has a direct dependency on: GCCcore/11.3.0 gnuplot/5.4.4-GCCcore-11.3.0 Java/11 Perl/5.34.1-GCCcore-11.3.0

Other Versions

These versions of canu are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version BEAR Apps Version
1.9-GCCcore-8.3.0-Perl-5.30.0 2019b

Last modified on 30th October 2023