flappie 2.0.0-foss-2019a-Python-3.7.2Flip-flop basecaller for Oxford Nanopore reads
Accessing flappie 2.0.0-foss-2019a-Python-3.7.2
To load the module for flappie 2.0.0-foss-2019a-Python-3.7.2 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load flappie/2.0.0-foss-2019a-Python-3.7.2
BEAR Apps Version
RunnieRunnie is an experimental basecaller that works in 'run-length encoded' space. Basecalling using runnie is a two-stage process: firstly, a .run file is created containing the Run-Length Compressed (RLC) basecall, along information about the likely length of each run, then this is decoded into a fasta basecall. The executable
runnieperforms the initial RLC basecall, which is then processed by the
For more information visit the flappie website.
This version of flappie has a direct dependency on: foss/2019a HDF5/1.10.5-gompi-2019a Python/3.7.2-GCCcore-8.2.0 SciPy-bundle/2019.03-foss-2019a
These versions of flappie are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
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Last modified on 12th November 2019