karyoploteR 1.10.5-foss-2019a-R-3.6.0

karyoploteR creates karyotype plots of arbitrary genomes and offers a complete set of functions to plot arbitrary data on them. It mimicks many R base graphics functions coupling them with a coordinate change function automatically mapping the chromosome and data coordinates into the plot coordinates. In addition to the provided data plotting functions, it is easy to add new ones.

Accessing karyoploteR 1.10.5-foss-2019a-R-3.6.0

To load the module for karyoploteR 1.10.5-foss-2019a-R-3.6.0 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load karyoploteR/1.10.5-foss-2019a-R-3.6.0

BEAR Apps Version

2020h

Extensions

  • bamsignals 1.16.0
  • bezier 1.1.2
  • karyoploteR 1.10.5
  • regioneR 1.16.4

More Information

For more information visit the karyoploteR website.

Dependencies

This version of karyoploteR has a direct dependency on: foss/2019a R/3.6.0-foss-2019a R-bundle-Bioconductor/3.9-foss-2019a-R-3.6.0

Last modified on 27th September 2019